Creating DataFrames
Reshaping Data – Change layout, sorting, reindexing, renaming
pd.melt(df)
Gather columns into rows.
df.pivot(columns='var', values='val')
Spread rows into columns.
pd.concat([df1,df2])
Append rows of DataFrames
pd.concat([df1,df2], axis=1)
Append columns of DataFrames
df.sort_values('mpg')
Order rows by values of a column (low to high).
df.sort_values('mpg’, ascending=False)
Order rows by values of a column (high to low).
df.rename(columns = {'y':'year'})
Rename the columns of a DataFrame
df.sort_index()
Sort the index of a DataFrame
df.reset_index()
Reset index of DataFrame to row numbers, moving
index to columns.
df.drop(columns=['Length’, 'Height'])
Drop columns from DataFrame
a
b
c
1
4
7
10
2
5
8
11
3
6
9
12
df = pd.DataFrame(
{"a" : [4, 5, 6],
"b" : [7, 8, 9],
"c" : [10, 11, 12]},
index = [1, 2, 3])
Specify values for each column.
df = pd.DataFrame(
[[4, 7, 10],
[5, 8, 11],
[6, 9, 12]],
index=[1, 2, 3],
columns=['a', 'b', 'c'])
Specify values for each row.
a
b
c
N
v
D
1
4
7
10
2
5
8
11
e
2
6
9
12
df = pd.DataFrame(
{"a" : [4 ,5, 6],
"b" : [7, 8, 9],
"c" : [10, 11, 12]},
index = pd.MultiIndex.from_tuples(
[('d’, 1), ('d’, 2),
('e’, 2)], names=['n’, 'v']))
Create DataFrame with a MultiIndex
Method Chaining
Most pandas methods return a DataFrame so that
another pandas method can be applied to the result.
This improves readability of code.
df = (pd.melt(df)
.rename(columns={
'variable':'var',
'value':'val'})
.query('val >= 200')
)
Logic in Python (and pandas)
<
Less than
!=
Not equal to
>
Greater than
df.column.isin
(values)
Group membership
==
Equals
pd.isnull
(obj)
Is
NaN
<=
Less than or equals
pd.notnull
(obj)
Is not
NaN
>=
Greater than or equals
&,|,~,^,
df.any(),df.all()
Logical
and, or, not, xor, any, all
regex (Regular Expressions) Examples
'
\.'
Matches strings containing
a period '.'
'Length$'
Matches strings ending with word 'Length'
'^Sepal'
Matches strings beginning with the word 'Sepal'
'^x[1
-5]$'
Matches strings beginning with 'x' and ending with 1,2,3,4,5
'^(?!
Species$).*'
Matches strings except
the string 'Species'
Pandas API Reference Pandas User Guide
Data Wrangling
with pandas Cheat Sheet
http://pandas.pydata.org
Tidy Data – A foundation for wrangling in pandas
In a tidy
data set:
Each variable is saved
in its own column
&
Each observation is
saved in its own row
Tidy data complements pandas’s vectorized
operations. pandas will automatically preserve
observations as you manipulate variables. No
other format works as intuitively with pandas.
*
M A
*
df[df.Length > 7]
Extract rows that meet logical criteria.
df.drop_duplicates()
Remove duplicate rows (only considers columns).
df.sample(frac=0.5)
Randomly select fraction of rows.
df.sample(n=10) Randomly select n rows.
df.nlargest(n, 'value’)
Select and order top n entries.
df.nsmallest(n, 'value')
Select and order bottom n entries.
df.head(n)
Select first n rows.
df.tail(n)
Select last n rows.
df[['width’, 'length’, 'species']]
Select multiple columns with specific names.
df['width'] or df.width
Select single column with specific name.
df.filter(regex='rege x')
Select columns whose name matches
regular expression regex.
df.iloc[10:20]
Select rows 10-20.
df.iloc[:, [1, 2, 5]]
Select columns in positions 1, 2 and 5 (first
column is 0).
df.loc[:, 'x2':'x4']
Select all columns between x2 and x4 (inclusive).
df.loc[df['a'] > 10, ['a’, 'c']]
Select rows meeting logical condition, and only
the specific columns .
df.iat[1, 2] Access single value by index
df.at[4, 'A'] Access single value by label
Subset Observations - rows Subset Variables - columns Subsets - rows and columns
Use df.loc[] and df.iloc[] to select only
rows, only columns or both.
Use df.at[] and df.iat[] to access a single
value by row and column.
First index selects rows, second index columns.
Cheatsheet for pandas (http://pandas.pydata.org/ originally written by Irv Lustig, Princeton Consultants, inspired by Rstudio Data Wrangling Cheatsheet
Using query
query() allows Boolean expressions for filtering
rows.
df.query('Length > 7')
df.query('Length > 7 and Width < 8')
df.query('Name.str.startswith("abc")',
engine="python")
Summarize Data
Make New Columns
Combine Data Sets
df['w'].value_counts()
Count number of rows with each unique value of variable
len(df)
# of rows in DataFrame.
df.shape
Tuple of # of rows, # of columns in DataFrame.
df['w'].nunique()
# of distinct values in a column.
df.describe()
Basic descriptive and statistics for each column (or GroupBy).
pandas provides a large set of summary functions that operate on
different kinds of pandas objects (DataFrame columns, Series,
GroupBy, Expanding and Rolling (see below)) and produce single
values for each of the groups. When applied to a DataFrame, the
result is returned as a pandas Series for each column. Examples:
sum()
Sum values of each object.
count()
Count non-NA/null values of
each object.
median()
Median value of each object.
quantile([0.25,0.75])
Quantiles of each object.
apply(function)
Apply function to each object.
min()
Minimum value in each object.
max()
Maximum value in each object.
mean()
Mean value of each object.
var()
Variance of each object.
std()
Standard deviation of each
object.
df.assign(Area=lambda df: df.Length*df.Height)
Compute and append one or more new columns.
df['Volume'] = df.Length*df.Height*df.Depth
Add single column.
pd.qcut(df.col, n, labels=False)
Bin column into n buckets.
Vector
function
Vector
function
pandas provides a large set of vector functions that operate on all
columns of a DataFrame or a single selected column (a pandas
Series). These functions produce vectors of values for each of the
columns, or a single Series for the individual Series. Examples:
shift(1)
Copy with values shifted by 1.
rank(method='dense')
Ranks with no gaps.
rank(method='min')
Ranks. Ties get min rank.
rank(pct=True)
Ranks rescaled to interval [0, 1].
rank(method='first')
Ranks. Ties go to first value.
shift(-1)
Copy with values lagged by 1.
cumsum()
Cumulative sum.
cummax()
Cumulative max.
cummin()
Cumulative min.
cumprod()
Cumulative product.
x1
x2
A
1
B
2
C
3
x1
x3
A
T
B
F
D
T
adf
bdf
Standard Joins
x1
x2
x3
A 1 T
B 2 F
C 3
NaN
x1
x2
x3
A
1.0
T
B
2.0
F
D
NaN
T
x1
x2
x3
A 1 T
B 2 F
x1
x2
x3
A 1 T
B 2 F
C 3
NaN
D
NaN
T
pd.merge(adf, bdf,
how='left', on='x1')
Join matching rows from bdf to adf.
pd.merge(adf, bdf,
how='right', on='x1')
Join matching rows from adf to bdf.
pd.merge(adf, bdf,
how='inner', on='x1')
Join data. Retain only rows in both sets.
pd.merge(adf, bdf,
how='outer', on='x1')
Join data. Retain all values, all rows.
Filtering Joins
x1
x2
A
1
B
2
x1
x2
C
3
adf[adf.x1.isin(bdf.x1)]
All rows in adf that have a match in bdf.
adf[~adf.x1.isin(bdf.x1)]
All rows in adf that do not have a match in bdf.
x1
x2
A
1
B
2
C
3
x1
x2
B
2
C
3
D
4
ydf
zdf
Set-like Operations
x1
x2
B
2
C
3
x1
x2
A
1
B
2
C
3
D
4
x1
x2
A
1
pd.merge(ydf, zdf)
Rows that appear in both ydf and zdf
(Intersection).
pd.merge(ydf, zdf, how='outer')
Rows that appear in either or both ydf and zdf
(Union).
pd.merge(ydf, zdf, how='outer',
indicator=True)
.query('_merge == "left_only"')
.drop(columns=['_merge'])
Rows that appear in ydf but not zdf (Setdiff).
Group Data
df.groupby(by="col")
Return a GroupBy object, grouped
by values in column named "col".
df.groupby(level="ind")
Return a GroupBy object, grouped
by values in index level named
"ind".
All of the summary functions listed above can be applied to a group.
Additional GroupBy functions:
max(axis=1)
Element-wise max.
clip(lower=-10,upper=10)
Trim values at input thresholds
min(axis=1)
Element-wise min.
abs()
Absolute value.
The examples below can also be applied to groups. In this case, the
function is applied on a per-group basis, and the returned vectors
are of the length of the original DataFrame.
Windows
df.expanding()
Return an Expanding object allowing summary functions to be
applied cumulatively.
df.rolling(n)
Return a Rolling object allowing summary functions to be
applied to windows of length n.
size()
Size of each group.
agg(function)
Aggregate group using function.
Handling Missing Data
df.dropna()
Drop rows with any column having NA/null data.
df.fillna(value)
Replace all NA/null data with value.
Cheatsheet for pandas (http://pandas.pydata.org/) originally written by Irv Lustig, Princeton Consultants, inspired by Rstudio Data Wrangling Cheatsheet
Plotting
df.plot.hist()
Histogram for each column
df.plot.scatter(x='w',y='h')
Scatter chart using pairs of points
