Page 1
Care, Maintenance, and
Troubleshooting of
HPLC Columns
Columns and Consumables
Edward Kim
Applications Engineer
January 17, 2008
Page 2
Goals for this presentation:
1. Introduce the most commonly observed column related
problems in HPLC.
2. Explore the reasons for these column problems.
3. Propose preventative maintenance and method
development/optimization approaches to minimize HPLC
column problems and increase column lifetimes.
Nano LC
Capillary LC
Analytical LC
Prep LC
Chip LC
Page 3
Troubleshooting in HPLC
20
00
15
00
10
00
5
0
0
0
0
5
1
0
1
5
2
0
2
5
Time
(min)
mA
U
Page 4
Major Areas of Column Problems -
Dramatic Changes in 3 Key Areas:
1. HPLC System Pressure
2. Chromatogram - Peak Shape
3. Chromatogram - Peak Retention/Selectivity
Page 5
Plugged inlet frit
Large pressure change Column contamination
Plugged packing
1. Pressure Issues
Column Observations
Potential Problems
Page 6
Determining the Cause and
Correcting High Back Pressure
Check pressure with/without column - many
pressure problems are due to blockages
elsewhere in the system.
If Column pressure remains high:
Rinse column (remove detector from flow path!)
– Eliminate column contamination and
plugged packing
– high molecular weight/adsorbed compounds
– precipitate from sample or buffer
Back flush column – may clear plugged column
inlet frit
Change column inlet frit (… or discard column)
Eliminate pressure issues – add a disposable 0.5 or 2 um
in-line filter to system.
Page 7
Pressure Problem I
Pressure Too
High
Column inlet frit contaminated
Frit in purge valve contaminated
Column contaminated
Blockage in a capillary, particularly
needle seat capillary
Rotor in injection valve plugged
Injection needle or needle seat
plugged
Pressure Measurement
Use this valve
to divide the
system
Page 8
Pressure Problem II
Pressure Too Low
Solvent inlet frit plugged
Leak in a capillary connection or
other part (pump seals)
Wrong solvent or flow rate
AIV (Active inlet valve) defective
Multichannel Gradient valve
incorrectly proportioning
Ball valve defective
Column defective
(stationary phase)
Pressure Measurement
Solvent inlet
frits
Page 9
1100 and 1200 Pumps
Exploded View
Pistons
Plunger Housing
Seals
Piston Support Rings
Outlet Valve
Active Inlet Valve
Purge
Valve
Holding Screw
Pump Housing
Page 10
Pump Check Valves
Active Inlet Valve
(common to all)
Outlet Ball Valve
Iso/Quat Pump G1311-60012
Binary Pump G1312-60012
Purge
Valve
G1312-60009
2
5
6
7
Cartridge
New style
1
Old style
G1312-60010
5062-8568
5062-8562
1. Gold Washer 5001-3707 5. Gold Seal 5001-3707
2. Plastic cap 01018-21207 6. Cap(4pk) 5062-2485
3. Gold Seal 5001-3707 7. PTFE (5pk) 01018-22707
4. Cap(4pk) 5062-2485
Page 11
1. Mobile phase without buffer salts (water/organic)
2. 100% Organic (MeOH or ACN)
3. Is pressure back in normal range?
4. If not, discard column or consider more drastic conditions:
75% Acetonitrile:25% Isopropanol, then
5. 100% Isopropanol
6. 100% Methylene Chloride*
7. 100% Hexane*
Column Cleaning
Use at least 10 x V
m
of each solvent for analytical columns
Flush with stronger solvents than your mobile phase.
Make sure detector is taken out of flow path.
Reversed-Phase Solvent Choices
in Order of Increasing Strength
When using either Hexane or Methylene Chloride the column must be flushed
with Isopropanol before returning to your reversed-phase mobile phase.
Page 12
• Use at least 50 mL of each
solvent
50% Methanol : 50% Chloroform
100% Ethyl Acetate
Column Cleaning
Normal Phase Solvent Choices
in Order of Increasing Strength
Page 13
Preventing Back Pressure Problems:
In-Line Devices
Mobile Phase
From Pump
Pre-Column
Injector
Guard
Column
Analytical
Column
To Detector
Filter and Guard Column Act on Sample
Pre-Column Acts on Mobile Phase
Filter
Page 14
Preventing Column Back Pressure Problems
1. Filter mobile phase:
- filter non-HPLC grade solvents
- filter buffer solutions
- Install an in-line filter between auto-sampler and column
(removes pump seal debris, ALS rotor debris, and sample
particulates). Use 2 um frit for 3.5 um columns, use 0.5 um frit for
1.8 um columns.
2. Filter all samples and standards
3. Perform sample clean-up (i.e. SPE, LLE) on dirty samples.
4. Appropriate column flushing – flush buffers from entire system at
end of day with water/organic mobile phase.
Page 15
2. Peak Shape Issues in HPLC
Split peaks
Peak tailing
Broad peaks
Poor efficiency (low N)
Inconsistent response
Many peak shape issues are also combinations - i.e. broad
and tailing or tailing with increased retention
Page 16
Split Peaks
Can be caused by:
• Column contamination
• Partially plugged frit
• Column void (gap in packing bed)
• Injection solvent effects
Page 17
0 5 10 15
1
3
4
2
Time (min)
0 5 10 15
1
3
4
2
Time (min)
0 5 10 15
1
3
4
2
Time (min)
Split Peaks
Column Contamination
Column: StableBond SB-C8, 4.6 x 150 mm, 5 μm Mobile Phase: 60% 25 mM Na
2
HPO
4
, pH 3.0 : 40% MeOH Flow Rate: 1.0 mL/min
Temperature: 35°C Detection: UV 254 nm Sample: Filtered OTC Cold Medication: 1. Pseudoephedrine 2. APAP 3. Unknown 4. Chlorpheniramine
Injection 1 Injection 30
Injection 1
After Column Wash
with 100% ACN
• Column washing eliminates the peak splitting, which resulted from a contaminant on the column.
Page 18
Split Peaks
Injection Solvent Effects
Column: StableBond SB-C8, 4.6 x 150 mm, 5 μm Mobile Phase: 82% H
2
O : 18% ACN
Injection Volume: 30 μL Sample: 1. Caffeine 2. Salicylamide
A. Injection Solvent
100% Acetonitrile
B. Injection Solvent
Mobile Phase
Injecting in a solvent stronger than the mobile phase can cause
peak shape problems, such as peak splitting or broadening.
Note: earlier peaks (low k) most affected
0 10
Time (min)
1
2
0 10
Time (min)
1
2
Page 19
Void Volume in Column
Partially Blocked Frit
Only One-Peak a Doublet- Coeluting Components
Early (low k) peaks most affected
Normal
Doublet
Peaks
Void Volume in Column
Peak Shape Problems - Doublets
Page 20
Determining the Cause of Split Peaks
1. Complex sample matrix or many samples analyzed - likely
column contamination or partially plugged column frit.
2. Mobile phase pH > 7 - likely column void due to silica
dissolution (unless specialty column used, Zorbax Extend-
C18 stable to pH 11)
3. Injection solvent stronger than mobile phase - likely split
and broad peaks, shape dependent on injection volume and
k value.
Page 21
Peak Tailing, Broadening
and Loss of Efficiency (N, plates)
May be caused by:
1. Column “secondary interactions”
2. Column packing voids
3. Column contamination
4. Column aging
5. Column loading
6. Extra-column effects
Page 22
Peak Tailing
Column “Secondary Interactions”
Peak tailing of amine analytes eliminated with mobile phase
modifier (TEA, triethylamine ) at pH 7
Column: Alkyl-C8, 4.6 x 150 mm, 5μm Mobile Phase: 85% 25 mM Na
2
HPO
4
pH 7.0 : 15% ACN Flow Rate: 1.0 mL/min
Temperature: 35°C Sample: 1. Phenylpropanolamine 2. Ephedrine 3. Amphetamine 4. Methamphetamine 5. Phenteramine
No TEA
USP TF (5%)
1. 1.29
2. 1.91
3. 1.63
4. 2.35
5. 1.57
10 mM TEA
USP TF (5%)
1. 1.19
2. 1.18
3. 1.20
4. 1.26
5. 1.14
T
Ime (min)
Time (min)
0.0 2.5 5.0
5
4
3
2
1
5
4
3
2
1
0.0 2.5 5.0
Page 23
Peak Tailing
Column “Secondary Interactions”
Column: Alkyl-C8, 4.6 x 150 mm, 5μm Mobile Phase: 85% 25 mM Na
2
HPO
4
: 15% ACN Flow Rate: 1.0 mL/min
Temperature: 35°C Sample: 1. Phenylpropanolamine 2. Ephedrine 3. Amphetamine 4. Methamphetamine 5. Phenteramine
pH 3.0
USP TF (5%)
4. 1.33
pH 7.0
USP TF (5%)
4. 2.35
• Reducing the mobile phase pH reduces interactions with silanols that
cause peak tailing. No TEA modifier required.
Time (min)
0.0 2.5 5.0
5
4
3
2
1
5
4
3
2
1
Time (min)
0.0 2.5 5.0
Page 24
0.0 2.5 5.0
2
4
1
3
Time (min)
2
4
1
3
0.0 2.5 5.0
Time (min)
2
41
3
0.0 2.5 5.0
Time (min)
Peak Tailing
Column Contamination
Column: StableBond SB-C8, 4.6 x 250 mm, 5μm Mobile Phase: 20% H
2
O : 80% MeOH Flow Rate: 1.0 mL/min
Temperature: R.T. Detection: UV 254 nm Sample: 1. Uracil 2. Phenol 3. 4-Chloronitrobenzene 4. Toluene
Plates TF
1. 7629 2.08
2. 12043 1.64
3. 13727 1.69
4 13355 1.32
Plates TF
1. 7906 1.43
2. 12443 1.21
3. 17999 1.19
4 17098 1.25
Plates TF
1. 7448 1.06
2. 12237 1.21
3. 15366 1.11
4 19067 1.17
QC test forward
direction
QC test reverse direction
QC test after cleaning
100% IPA, 35°C
Page 25
Analytical vs. Preparative Scale HPLC. Non-linear
Adsorption Isotherms, or Overload Conditions:
k’
W
Amount injected
Analytical Prep
Retention
Peak Width
Group/Presentation Title
Agilent Restricted
October 28, 2008Month ##,
200X
Page 26
Peak Tailing/Broadening
Sample Load Effects
Columns: 4.6 x 150 mm, 5μm Mobile Phase: 40% 25 mM Na
2
HPO
4
pH 7.0 : 60% ACN Flow Rate: 1.5 mL/min
Temperature: 40°C Sample: 1. Desipramine 2. Nortriptyline 3. Doxepin 4. Imipramine 5. Amitriptyline 6. Trimipramine
Broadening
Competitive C8
Plates
A.
B.
C.
D.
High Load
x10
Low Load
CD
1. 850 5941
2. 815 7842
3. 2776 6231
4. 2539 8359
5. 2735 10022
6. 5189 10725
Tailing
Eclipse XDB-C8
USP TF (5%)
AB
1. 1.60 1.70
2. 2.00 1.90
3. 1.56 1.56
4. 2.13 1.70
5. 2.15 1.86
6. 1.25 1.25
0 5 10
Time (min)
0 5 10
Time (min)
0 5
Time (min)
0 5
Time (min)
Page 27
Peak Broadening, Splitting
Column Void
Multiple peak shape changes can be caused by the same column
problem. In this case a void resulted from silica dissolved at high pH.
Mobile Phase: 50%ACN: 50% Water : 0.2% TEA
(~ pH 11)
After 30 injections
Initial
Page 28
Peak Tailing
Injector Seal Failure
Column: Bonus-RP, 4.6 x 75 mm, 3.5 μm Mobile Phase: 30% H
2
O : 70% MeOH Flow Rate: 1.0 mL/min
Temperature: R.T. Detection: UV 254 nm Sample: 1. Uracil 2. Phenol 3. N,N-Dimethylaniline
Plates USP TF (5%)
1. 2235 1.72
2. 3491 1.48
3. 5432 1.15
Plates USP TF (5%)
1. 3670 1.45
2. 10457 1.09
3. 10085 1.00
Before
After replacing rotor seal
and isolation seal
Overdue instrument maintenance can sometimes cause peak shape problems.
0.0 0.5 1.0 1.5
Time (min)
2
1
3
0.0 0.5 1.0 1.5 2.0
Time (min)
2
1
3
Page 29
Peak Tailing
Extra-Column Volume
Column: StableBond SB-C18, 4.6 x 30 mm, 3.5 μm Mobile Phase: 85% H
2
O with 0.1% TFA : 15% ACN Flow Rate: 1.0 mL/min
Temperature: 35°C Sample: 1. Phenylalanine 2. 5-benzyl-3,6-dioxo-2-piperazine acetic acid 3. Asp-phe 4. Aspartame
10 μL extra-column
volume
50 μL extra-column
volume (tubing)
Time (min)
0.0 0.5 1.0 1.5 2.0
4
3
2
1
Time (min)
0.0 0.5 1.0 1.5 2.0
4
3
2
1
Page 30
Determining the Cause of Peak Tailing
Evaluate mobile phase effects - alter mobile phase pH
and additives to eliminate secondary interactions
Evaluate column choice - try column with high purity
silica or different bonding technology
Reduce sample load – volume injection and
concentration
Eliminate extra-column effects – tubing, fittings,
Uv cell
Flush column and check for aging/void
Page 31
Reproducibility
Typically,
Area and Peak Height problems together point to the autosampler system
Area and Retention Time problems together point to the pump
Peak retention time precision:
with oven: <
0.3%
without oven: <
0.7%
Peak area precision: <
1.5%
Page 32
Problems with Reproducibility – Peak Areas
Peak Areas not
Reproducible
Rotor Seal
Seal
Pump
Column
With peak height
Rotor seal cross-port leak or injection valve not tight
Piston seal of metering unit leaking
Needle partially blocked
With retention time
Variable pump flow rate
Other
Capillary from injector to detector not tight
Detector equilibration problems
Page 33
3. Retention Issues
Retention time changes (t
r
)
Retention factor changes (k’)
Selectivity changes (a)
Page 34
Retention time t
R
, Retention factor k’, and
Selectivity factor α
Retention factor k’ = (t
R
-t
0
)/t
0
Selectivity factor α
α = k
2
/k
1
Page 35
Changes in Retention (k) -
Same Column, Over Time
May be caused by:
1. Column aging
2. Column contamination
3. Insufficient column equilibration
4. Poor column/mobile phase combination
5. Change in mobile phase
6. Change in flow rate
7. Change in column temperature
8. Other instrument issues
Page 36
0 20 30
Time (min)
0 10
Time (min)
Mobile Phase Change
Causes Change in Retention
Fresh TFA Added to
Mobile Phase
60% MeOH: 40% 0.1%TFA
Volatile TFA evaporated/degassed from mobile phase.
Replacing it solved problem.
Chromatography is from a protein binding study and
peak shape as expected.
Page 37
Separation Conditions That
Cause Changes in Retention*
Flow Rate ± 1% ± 1% t
r
Temp ± 1° C ± 1 to 2% t
r
%Organic ± 1% ± 5 to 10% t
r
pH ± 0.01% ± 0 to 1% t
r
*excerpted from “Troubleshooting HPLC Systems”, J. W. Dolan and L. R. Snyder, p 442.
Page 38
Determining the Cause of Retention
Changes
Same Column
1. Determine k’, a, and t
r
for suspect peaks
2. Wash column
3. Test new column - note lot number
4. Review column equilibration procedures
5. Make up fresh mobile phase and test
6. Check instrument performance
Page 39
Change in Retention/Selectivity
Column-to-Column
1. Different column histories (aging)
2. Insufficient/inconsistent equilibration
3. Poor column/mobile phase combination
4. Change in mobile phase
5. Change in flow rate
6. Other instrument issues
7. Slight changes in column bed volume (t
r
only)
Page 40
Example Change in Retention/Selectivity
Mobile Phase Variation
Column-to-Column
“I have experimented with our mobile phase, opening new bottles of all
mobile phase components. When I use all fresh ingredients, the problem
ceases to exist, and I have narrowed the problem to either a bad bottle of
TEA or phosphoric acid. Our problem has been solved.”
Column 1
Column 2 - Fresh
mobile phase
Column 2
0 4 6
Time (min)
0 2 3 4 5 6 7
Time (min)
0 4 6
Time (min)
Page 41
Minimize Change in Retention/Selectivity
Lot-to-Lot
1. All causes of column-to-column change*
2. Method ruggedness (buffers/ionic strength)
3. pH sensitivity (sample/column interactions)
*All causes of column-to-column change should be considered first,
especially when only one column from a lot has been tested.
Evaluate:
Page 42
0 2 4 6 8 10 12 14 16 18
Time (min)
2-Base
3
4-Base
1
0 2 4 6 8 10 12 14 16 18
Time (min)
2
3
4
1
Lot-to-Lot Selectivity Change - pH
pH 4.5 shows selectivity change from lot-to-lot for basic compounds
pH 3.0 shows no selectivity change from lot-to-lot, indicating silanol
sensitivity at pH 4.5
Evaluate several pH levels to establish most robust choice of pH
pH 4.5 - Lot 1
pH 3.0 - Lot 1
pH 4.5 - Lot 2
pH 3.0 - Lot 2
0 2 4 6 8 10 12 14 16 18
Time (min)
2-Base
3
4-Base
1
0 2 4 6 8 10 12 14 16 18
Time (min)
2
3
4
1
Page 43
Problems with Reproducibility – Peak Areas
Peak Areas not
Reproducible
Rotor Seal
Seal
Pump
Column
With peak height
Rotor seal cross-port leak or injection valve not tight
Piston seal of metering unit leaking
Needle partially blocked
With retention time
Variable pump flow rate
Other
Capillary from injector to detector not tight
Detector equilibration problems
Page 44
Problems with Reproducibiliy – Retention Time
Retention Times not Reproducible
Pump Problems
Mobile phase composition problems
Valves AIV, ball valve defective
Flow rate problems
Column Oven Problems
Temperature fluctuations
Other
Column equilibration
Column deterioration
Page 45
Autosampler
Principle of Operation
From pump
To column
Metering device
Rheodyne 7750
Sampling
unit
To waste
Vial gripper
Standard loop volume300µl
Total delay volume 300µl + Vinj
Minimal (bypass) delay volume 6.2ul
O 4-port rotor seal
Widest dynamic injection range:
0.1 µl-1.5 ml (w/addt'l hardware)
Page 46
Evaluate Retention Changes
Lot-to-Lot
1. Eliminate causes of column-to-column
selectivity change
2. Re-evaluate method ruggedness - modify method
3. Determine pH sensitivity - modify method
4. Classify selectivity changes
5. Contact manufacturer for assistance
*
Agilent Column Support: 800-227-9770, option 4, option 2 (LC columns)
Page 47
1. High pressure
2. Undesirable peak shape
3. Changes in retention/selectivity
These problems are not always
associated with the column and may
be caused by instrument and
experimental condition issues.
Conclusions
HPLC column problems are evident as:
Page 48
The End – Thank You!
Agilent LC Column Tech Support: 800-227-9770 #4, #2 Email:
Page 49
Separation Fundamentals
Agilent Restricted
December 11, 2007
Agilent LC Columns and Agilent J&W GC
Columns Scientific Technical Support
800-227-9770 (phone: US & Canada)
*
302-993-5304 (phone)
For LC columns
Select option 4, then option 2
For GC Columns
* Select option 4, then option 1.
www.agilent.com/chem
Page 50
Separation Fundamentals
Agilent Restricted
December 11, 2007
Looking for More Information on Agilent’s LC Systems
and Software?
Agilent offers a full range of LC training courses including hands-on
courses with the latest 1200 series equipment including Rapid
Resolution, and additional
1100 series courses.
Each course includes a course manual for future reference and a
certificate of completion. All courses
are taught by industry experts.
Call 800.227.9770, Option 5 or visit
www.agilent.com/chem/education
to register today!
Page 51
Separation Fundamentals
Agilent Restricted
December 11, 2007
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Page 52
Separation Fundamentals
Agilent Restricted
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Upcoming LC e-Seminars
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February 13, 2008 – 1:00 pm EST
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March 18, 2008 – 2:00 pm EST